PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

Plant Transcription Factor Database

v4.0

Previous version: v3.0

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SapurV1A.0631s0100.2.p

Organism

Salix purpurea

Taxonomic ID

77065

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix

Family

Dof

Protein Properties

Length: 372aa MW: 40454.8 Da PI: 6.2493

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SapurV1A.0631s0100.2.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	123.2	8.8e-39	100	159	2	61
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 ++k+l+cprC+s +tkfCy+nny+++qPr+fCk+C+ryWt+GG++rnvP+G+grrknk+ SapurV1A.0631s0100.2.p 100 PDKILPCPRCNSLDTKFCYFNNYNVNQPRHFCKNCQRYWTAGGTVRNVPIGAGRRKNKHL 159 7899*****************************************************985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	1.0E-29	93	157	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	5.4E-32	102	158	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.574	104	158	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	106	142	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 372 aa Download sequence Send to blast
MKGDSKDPAF KLFGRQIPVP DTQFPAETLA KGSCGDITKL ETKGPSEENS EKPEILSVLG 60 QGEEEMPAAM QVNETEVIAK PMEGQLEANG TDKERVFKKP DKILPCPRCN SLDTKFCYFN 120 NYNVNQPRHF CKNCQRYWTA GGTVRNVPIG AGRRKNKHLA TQYRQILVSS DGMPIARMEN 180 SDSAGHQLPS SVESATTLRP STTNGMVLKF GPEAPLCDSM ETVLNLGDPK RYEMSSVNYQ 240 DNGEEPPSCG SSKAASIVRE NELPENITKE QVDLPASSNN LGAPHSLHCY PVPSWVFPRN 300 PAWNNVTSMA AAQHSSGQAC ITNVPTQVQL CPTPMVAVPS ICPLNIPLQF VPASYWGCMP 360 TWTAGTGNVP L*

Sequence ? help Back to Top

Protein Sequence Length: 372 aa Download sequence Send to blast

MKGDSKDPAF KLFGRQIPVP DTQFPAETLA KGSCGDITKL ETKGPSEENS EKPEILSVLG  60
QGEEEMPAAM QVNETEVIAK PMEGQLEANG TDKERVFKKP DKILPCPRCN SLDTKFCYFN  120
NYNVNQPRHF CKNCQRYWTA GGTVRNVPIG AGRRKNKHLA TQYRQILVSS DGMPIARMEN  180
SDSAGHQLPS SVESATTLRP STTNGMVLKF GPEAPLCDSM ETVLNLGDPK RYEMSSVNYQ  240
DNGEEPPSCG SSKAASIVRE NELPENITKE QVDLPASSNN LGAPHSLHCY PVPSWVFPRN  300
PAWNNVTSMA AAQHSSGQAC ITNVPTQVQL CPTPMVAVPS ICPLNIPLQF VPASYWGCMP  360
TWTAGTGNVP L*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002325441.1	0.0	hypothetical protein POPTR_0019s05720g
TrEMBL	B9IPV3	0.0	B9IPV3_POPTR; Uncharacterized protein
STRING	POPTR_0019s05720.1	0.0	(Populus trichocarpa)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G47500.1	4e-44	cycling DOF factor 3

Link Out ? help Back to Top
Phytozome	SapurV1A.0631s0100.2.p